By Tara Lohan
Visitors walk slowly through a room of dimmed lights and glowing tanks that bring the mysteries of the sea into plain view. The Steinhart Aquarium at the California Academy of Sciences in San Francisco is home to 900 different species — everything from brightly colored reef fish to prickly sea urchins, even an albino alligator named Claude.
But some of the most exciting things to see are out of the public's view.
In a specially constructed darkroom in one of the labs, scientists are coaxing corals to spawn and studying how to increase the chances of survivorship for baby corals. It's all part of a larger effort to give threatened reefs — and all the species that depend on them — a fighting chance.
Reefs at Risk
Shallow tropical reefs face a long list of threats including overfishing, disease and pollution, but one of the biggest dangers is climate change, which is contributing to rising sea surface temperatures and increasing ocean acidification. It's estimated that in the past 30 years half the world's coral reefs have died and by the end of the century we could lose 90 percent.
That's bad news for millions of people and marine life.
Coral reefs have important biodiversity and economic values. Reefs are like rainforests, providing food and shelter to thousands of other species. Coral reefs cover just 0.1 percent of the ocean floor, but they host more than 25 percent of the ocean's biodiversity. "So if we lose them, then we lose a disproportionate amount of biodiversity," said Rebecca Albright, a coral reef biologist who co-leads the California Academy of Science's Hope for Reefs initiative that works on researching and restoring coral reefs.
Reefs also provide key ecosystem services, valued at an estimated at $375 billion a year. Coastal communities rely on subsistence and commercial fishing supported by reefs, and their beauty and biodiversity bring in big tourism dollars. Reefs also provide a buffer for shorelines, helping to protect against storms and erosion — increasingly expensive threats with climate change.
Albright spent years studying what was going wrong with reefs. "I've done a lot of work looking at impacts of ocean acidification on reproduction and coral settlement and there's not a lot of good news there," she said.
So she shifted her focus.
"If we're losing corals at an unprecedented rate, then the only way we're going to get them back is if they can reproduce or grow more quickly."
Corals and algae grow in a lab at the California Academy of Sciences.
To understand how scientists are hoping to help save corals, you need a quick primer in coral reproduction.
Most corals can reproduce in two ways. There's asexual reproduction — like a starfish, you can break off a piece of coral and the fragment will regenerate. Many conservation efforts have (and continue to) focus on fragmenting corals and then planting them back out onto reefs. These kinds of efforts work well at the hectare scale, said Albright, but they're not effective for ecosystem-wide restoration. At this rate we're a long way from being able to keep pace with the rate of environmental loss.
"You can imagine it's very laborious and time consuming," she said. "And when you look at the fact that we've lost 50 percent of the Great Barrier Reef, which is 2,300 kilometers long, individual divers going out and physically planting onto the reef is just not scalable."
Corals, however, can also reproduce sexually. Synchronized reproductive events happen in a rather dramatic fashion — usually just once a year for most corals, and for many it's at the end of the summer, after sunset and following a full moon, said Albright. Eggs and sperm are "broadcast" into the water column, where they combine and fertilize to produce larvae that eventually fix themselves to the ocean floor or other hard surfaces where they begin to grow from individual polyps into a colony. It will be a few months before the growing coral is even visible to the naked eye.
Understanding these reproductive processes could help solve another natural problem: Some reefs are currently dominated by a single clone and that low genetic variation can lead to disaster in times of environmental change. It's of special concern now as corals try to adapt to warming waters.
Sexual reproduction is "the only avenue for genetic diversity and so that's the one that we're focused on right now," said Albright.
"So what we're trying to do is just focus on helping corals sexually reproduce, get as much genetic diversity out there as possible and then let nature pick which ones win and which ones lose, because that's how it's supposed to happen," she said.
Spawning in Captivity
At the California Academy of Sciences darkroom, Albright and her team have built a special environment filled with tanks programmed to simulate the seasonal temperature and light changes of the Palau archipelago, home to the staghorn corals (Acropora cervicornis) they're growing.
This complex process, which took a year and a half to develop, provides a unique opportunity to observe not just the reproduction but what happens to the resulting larvae, helping the researchers to better understand what may help more larvae make it to maturity out on the reef.
In nature, that's not an easy task. Life is tough for a microscopic coral on the ocean floor — there are endless things that could eat or outcompete it. Only about one in a million survive.
"The goal here is just to figure out how to get these corals to produce more offspring that are more viable and then use that knowledge to help field efforts," said Albright. "If we can increase survivorship by 10- or 100-fold, then that would be hugely helpful." This is especially true for reefs that are already depleted.
Rebecca Albright examines baby corals spawned in the lab under a microscope.
One of the things her lab will study over the next several years is whether energetic enhancements, like better nutrition, can help corals like they do in early life stage for humans.
"If you could add things that would make the larvae more energetically replete, would that translate into better post-settlement survivorship?" she asks. "We'll be looking at that, along with how different [water] flows may make them grow faster and other ways to enhance their survivorship."
Hope for Corals isn't the only project out there trying to save corals. Other scientific efforts are studying how to get corals to be more robust against stress or to selectively breed "super corals" that are more resistant to heat or other pressures. Albright said she's heartened by this broad array of scientific efforts. "I think the solutions that are being explored by working at the intersection of disciplines like biology, engineering and technology are the most exciting as they have high capacity to help us scale results to meaningful levels," she said. "Most of that work is in early days but is exciting in terms of potential."
But she admits, there's still a long way to go, much to learn and no magic bullet for reefs.
Also, the clock is ticking.
"We're losing things so quickly right now, most conversations are switching towards talking about saving certain things and where we focus our efforts — because we can't save everything," she said.
Reposted with permission from our media associate The Revelator.
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By Ana Maldonado-Contreras
- Your gut is home to trillions of bacteria that are vital for keeping you healthy.
- Some of these microbes help to regulate the immune system.
- New research, which has not yet been peer-reviewed, shows the presence of certain bacteria in the gut may reveal which people are more vulnerable to a more severe case of COVID-19.
You may not know it, but you have an army of microbes living inside of you that are essential for fighting off threats, including the virus that causes COVID-19.
How Do Resident Bacteria Keep You Healthy?<p>Our immune defense is part of a complex biological response against harmful pathogens, such as viruses or bacteria. However, because our bodies are inhabited by trillions of mostly beneficial bacteria, virus and fungi, activation of our immune response is tightly regulated to distinguish between harmful and helpful microbes.</p><p>Our bacteria are spectacular companions diligently helping prime our immune system defenses to combat infections. A seminal study found that mice treated with antibiotics that eliminate bacteria in the gut exhibited an impaired immune response. These animals had low counts of virus-fighting white blood cells, weak antibody responses and poor production of a protein that is vital for <a href="https://doi.org/10.1073/pnas.1019378108" target="_blank">combating viral infection and modulating the immune response</a>.</p><p><a href="https://doi.org/10.1371/journal.pone.0184976" target="_blank" rel="noopener noreferrer">In another study</a>, mice were fed <em>Lactobacillus</em> bacteria, commonly used as probiotic in fermented food. These microbes reduced the severity of influenza infection. The <em>Lactobacillus</em>-treated mice did not lose weight and had only mild lung damage compared with untreated mice. Similarly, others have found that treatment of mice with <em>Lactobacillus</em> protects against different <a href="https://doi.org/10.1038/srep04638" target="_blank" rel="noopener noreferrer">subtypes of</a> <a href="https://doi.org/10.1038/s41598-017-17487-8" target="_blank" rel="noopener noreferrer">influenza</a> <a href="https://doi.org/10.1371/journal.ppat.1008072" target="_blank" rel="noopener noreferrer">virus</a> and human respiratory syncytial virus – the <a href="https://doi.org/10.1038/s41598-019-39602-7" target="_blank" rel="noopener noreferrer">major cause of viral bronchiolitis and pneumonia in children</a>.</p>
Chronic Disease and Microbes<p>Patients with chronic illnesses including Type 2 diabetes, obesity and cardiovascular disease exhibit a hyperactive immune system that fails to recognize a harmless stimulus and is linked to an altered gut microbiome.</p><p>In these chronic diseases, the gut microbiome lacks bacteria that activate <a href="https://doi.org/10.1126/science.1198469" target="_blank" rel="noopener noreferrer">immune cells</a> that block the response against harmless bacteria in our guts. Such alteration of the gut microbiome is also observed in <a href="https://doi.org/10.1073/pnas.1002601107" target="_blank" rel="noopener noreferrer">babies delivered by cesarean section</a>, individuals consuming a poor <a href="https://doi.org/10.1038/nature12820" target="_blank" rel="noopener noreferrer">diet</a> and the <a href="https://doi.org/10.1038/nature11053" target="_blank" rel="noopener noreferrer">elderly</a>.</p><p>In the U.S., 117 million individuals – about half the adult population – <a href="https://health.gov/our-work/food-nutrition/2015-2020-dietary-guidelines/guidelines/" target="_blank" rel="noopener noreferrer">suffer from Type 2 diabetes, obesity, cardiovascular disease or a combination of them</a>. That suggests that half of American adults carry a faulty microbiome army.</p><p>Research in my laboratory focuses on identifying gut bacteria that are critical for creating a balanced immune system, which fights life-threatening bacterial and viral infections, while tolerating the beneficial bacteria in and on us.</p><p>Given that diet affects the diversity of bacteria in the gut, <a href="https://www.umassmed.edu/nutrition/melody-trial-info/" target="_blank" rel="noopener noreferrer">my lab studies show how diet can be used</a> as a therapy for chronic diseases. Using different foods, people can shift their gut microbiome to one that boosts a healthy immune response.</p><p>A fraction of patients infected with SARS-CoV-2, the virus that causes COVID-19 disease, develop severe complications that require hospitalization in intensive care units. What do many of those patients have in common? <a href="https://www.cdc.gov/mmwr/volumes/69/wr/mm6912e2.htm" target="_blank" rel="noopener noreferrer">Old age</a> and chronic diet-related diseases like obesity, Type 2 diabetes and cardiovascular disease.</p><p><a href="http://doi.org/10.1016/j.jada.2008.12.019" target="_blank" rel="noopener noreferrer">Black and Latinx people are disproportionately affected by obesity, Type 2 diabetes and cardiovascular disease</a>, all of which are linked to poor nutrition. Thus, it is not a coincidence that <a href="https://www.cdc.gov/mmwr/volumes/69/wr/mm6933e1.htm" target="_blank" rel="noopener noreferrer">these groups have suffered more deaths from COVID-19</a> compared with whites. This is the case not only in the U.S. but also <a href="https://www.washingtonpost.com/world/europe/blacks-in-britain-are-four-times-as-likely-to-die-of-coronavirus-as-whites-data-show/2020/05/07/2dc76710-9067-11ea-9322-a29e75effc93_story.html" target="_blank" rel="noopener noreferrer">in Britain</a>.</p>
Discovering Microbes That Predict COVID-19 Severity<p>The COVID-19 pandemic has inspired me to shift my research and explore the role of the gut microbiome in the overly aggressive immune response against SARS-CoV-2 infection.</p><p>My colleagues and I have hypothesized that critically ill SARS-CoV-2 patients with conditions like obesity, Type 2 diabetes and cardiovascular disease exhibit an altered gut microbiome that aggravates <a href="https://theconversation.com/exercise-may-help-reduce-risk-of-deadly-covid-19-complication-ards-136922" target="_blank" rel="noopener noreferrer">acute respiratory distress syndrome</a>.</p><p>Acute respiratory distress syndrome, a life-threatening lung injury, in SARS-CoV-2 patients is thought to develop from a <a href="http://doi.org/10.1016/j.cytogfr.2020.05.003" target="_blank" rel="noopener noreferrer">fatal overreaction of the immune response</a> called a <a href="https://theconversation.com/blocking-the-deadly-cytokine-storm-is-a-vital-weapon-for-treating-covid-19-137690" target="_blank" rel="noopener noreferrer">cytokine storm</a> <a href="http://doi.org/10.1016/S2213-2600(20)30216-2" target="_blank" rel="noopener noreferrer">that causes an uncontrolled flood</a> <a href="http://doi.org/10.1016/S2213-2600(20)30216-2" target="_blank" rel="noopener noreferrer">of immune cells into the lungs</a>. In these patients, their own uncontrolled inflammatory immune response, rather than the virus itself, causes the <a href="http://doi.org/10.1007/s00134-020-05991-x" target="_blank" rel="noopener noreferrer">severe lung injury and multiorgan failures</a> that lead to death.</p><p>Several studies <a href="https://doi.org/10.1016/j.trsl.2020.08.004" target="_blank" rel="noopener noreferrer">described in one recent review</a> have identified an altered gut microbiome in patients with COVID-19. However, identification of specific bacteria within the microbiome that could predict COVID-19 severity is lacking.</p><p>To address this question, my colleagues and I recruited COVID-19 hospitalized patients with severe and moderate symptoms. We collected stool and saliva samples to determine whether bacteria within the gut and oral microbiome could predict COVID-19 severity. The identification of microbiome markers that can predict the clinical outcomes of COVID-19 disease is key to help prioritize patients needing urgent treatment.</p><p><a href="https://doi.org/10.1101/2021.01.05.20249061" target="_blank" rel="noopener noreferrer">We demonstrated</a>, in a paper which has not yet been peer reviewed, that the composition of the gut microbiome is the strongest predictor of COVID-19 severity compared to patient's clinical characteristics commonly used to do so. Specifically, we identified that the presence of a bacterium in the stool – called <em>Enterococcus faecalis</em>– was a robust predictor of COVID-19 severity. Not surprisingly, <em>Enterococcus faecalis</em> has been associated with <a href="https://doi.org/10.1053/j.gastro.2011.05.035" target="_blank" rel="noopener noreferrer">chronic</a> <a href="https://doi.org/10.1016/S0002-9440(10)61172-8" target="_blank" rel="noopener noreferrer">inflammation</a>.</p><p><em>Enterococcus faecalis</em> collected from feces can be grown outside of the body in clinical laboratories. Thus, an <em>E. faecalis</em> test might be a cost-effective, rapid and relatively easy way to identify patients who are likely to require more supportive care and therapeutic interventions to improve their chances of survival.</p><p>But it is not yet clear from our research what is the contribution of the altered microbiome in the immune response to SARS-CoV-2 infection. A recent study has shown that <a href="https://doi.org/10.1101/2020.12.11.416180" target="_blank" rel="noopener noreferrer">SARS-CoV-2 infection triggers an imbalance in immune cells</a> called <a href="https://doi.org/10.1111/imr.12170" target="_blank" rel="noopener noreferrer">T regulatory cells that are critical to immune balance</a>.</p><p>Bacteria from the gut microbiome are responsible for the <a href="https://doi.org/10.7554/eLife.30916.001" target="_blank" rel="noopener noreferrer">proper activation</a> <a href="https://doi.org/10.1126/science.1198469" target="_blank" rel="noopener noreferrer">of those T-regulatory</a> <a href="https://doi.org/10.1038/nri.2016.36" target="_blank" rel="noopener noreferrer">cells</a>. Thus, researchers like me need to take repeated patient stool, saliva and blood samples over a longer time frame to learn how the altered microbiome observed in COVID-19 patients can modulate COVID-19 disease severity, perhaps by altering the development of the T-regulatory cells.</p><p>As a Latina scientist investigating interactions between diet, microbiome and immunity, I must stress the importance of better policies to improve access to healthy foods, which lead to a healthier microbiome. It is also important to design culturally sensitive dietary interventions for Black and Latinx communities. While a good-quality diet might not prevent SARS-CoV-2 infection, it can treat the underlying conditions related to its severity.</p><p><em><a href="https://theconversation.com/profiles/ana-maldonado-contreras-1152969" target="_blank">Ana Maldonado-Contreras</a> is an assistant professor of Microbiology and Physiological Systems at the University of Massachusetts Medical School.</em></p><p><em>Disclosure statement: Ana Maldonado-Contreras receives funding from The Helmsley Charitable Trust and her work has been supported by the American Gastroenterological Association. She received The Charles A. King Trust Postdoctoral Research Fellowship. She is also member of the Diversity Committee of the American Gastroenterological Association.</em></p><p><em style="">Reposted with permission from <a href="https://theconversation.com/a-healthy-microbiome-builds-a-strong-immune-system-that-could-help-defeat-covid-19-145668" target="_blank" rel="noopener noreferrer" style="">The Conversation</a>. </em></p>
By Jeff Masters, Ph.D.
The New Climate War: the fight to take back our planet is the latest must-read book by leading climate change scientist and communicator Michael Mann of Penn State University.
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