At Least 500 Jaguars Lost Their Lives or Habitat in Amazon Fires
By Shreya Dasgupta
The fires ravaging the Amazon forest in Brazil and Bolivia this year have burned key habitats of at least 500 adult, resident jaguars as of Sept. 17, rendering them dead or homeless, say experts at Panthera, the global wild cat conservation organization.
"The number of homeless or dead jaguars has undoubtedly increased since Panthera's estimate was released, and will continue to increase until the rains come," Esteban Payan, Panthera's South America regional director, told Mongabay in an email.
To estimate the number of affected jaguars (Panthera onca), Panthera researchers used the total area of jaguar habitat burned, taken from burned areas reported by the Brazilian National Institute for Space Research (INPE) and the Environmental Secretariat of the Governor's office of Santa Cruz, Bolivia. They combined this with a jaguar density estimate of 2.5 jaguars per 100 square kilometers (39 square miles) derived from a 2018 study authored by jaguar experts.
"Density from jaguar populations in central Amazonia, the work from my Ph.D., was more around 3 animals in 100 square kilometers. So again, this is 'at least' that number  of jaguars impacted," Payan said.
In Bolivia in particular, the fires have so far destroyed more than 2 million hectares (4.9 million acres) of forest in one of South America's key "catscapes," a region that Panthera has identified as having the highest predicted density of cat species on the continent. Some parts of Bolivia's catscape are home to eight cat species, including the jaguar, puma (Puma concolor), ocelot (Leopardus pardalis), margay (Leopardus wiedii), oncilla (Leopardus tigrinus), jaguarundi (Herpailurus yagouaroundi), Geoffrey's cat (Leopardus geoffroyi) and Pampas cat (Leopardus colocola).
Map showing burned areas in Bolivia and wild cat presence. Image courtesy of Panthera.
Some researchers estimate that millions of animals have likely been lost to the Amazon fires this year. But given the widespread and destructive nature of the fires this year, the exact number of jaguars killed is difficult to calculate. Panthera researchers, however, predict that hundreds of jaguars will starve or turn to killing livestock in neighboring ranches as a consequence of the fires, "where they will be hunted down," Payan said.
Increased interactions between jaguars and livestock will likely only intensify conflict between the animals and ranchers and farmers. This would throw a spanner in the efforts of conservationists who've been working to resolve this conflict for decades.
"Jaguars with GPS collars from our partner Oncafari in the Brazilian Pantanal have already been captured and moved from the fires in an attempt to protect the cats," Payan said.
In addition to jaguars, Panthera has obtained reports and captured images of pumas and ocelots fleeing the fires, as well as of animals that burned to death, both small, slow-moving ones like turtles, tortoises and caimans, and fast-moving ones like marsh deer and peccaries. "Fires don't burn in a straight line so many animals get trapped in circles of fire and many others die of thirst and heat even before fire touches them," Payan said.
Burned habitat in the Brazilian Pantana. Image by Oncafari.
Fires not only destroy critical habitats, they also fragment forests, reducing connectivity between habitats that animals need to live and thrive. Moreover, repeated burning of the Amazon forest every year — almost entirely lit by humans to clear land for ranches, pastures or agriculture land — has compromised the forest's ability to recover when some of the burned areas are eventually abandoned and allowed to regenerate, researchers have found.
"The shock waves of these exceptionally large and, for the most part, human-lit fires are being felt not only by the wildlife and people of Brazil and Bolivia, but also those in Peru and Paraguay," Howard Quigley, Panthera's jaguar program and conservation science executive director, said in a statement. "These fires stand to directly impact the continent, and in the end, the health of the planet as they hurt one of the cradles of biodiversity and greatest counter forces against global warming."
Overall, the fires will affect Panthera's efforts to create one of the world's largest, contiguous jaguar corridors across South America's Pantanal region. But Payan said that the team is hoping to address this by scaling up its cooperation with communities, first responders, local NGOs, and protected-area managers; better equipping rangers to manage fires in protected areas; reducing cattle losses to jaguars and increasing productivity on existing ranches to limit further deforestation; and working with landowners, businesses and governments to plan and manage lands responsibly.
"Fire is now an intensified threat to jaguars and their associated biodiversity because of its intensity, speed and scale," he said. "The intensity of destruction is nearly absolute, the speed of propagation implies that in minutes it can become nearly impossible to control, and as it will cover vast areas the scale of damage to the natural world is immense."
Marsh deer in Bolivia, one of the jaguar's prey. Image by Juan Carlos Urgel.
Out of the frying pan into the fire.— Extinction Rebellion ⌛️ (@ExtinctionR) September 6, 2019
Life on Earth is in crisis: we have entered a period of abrupt climate breakdown, and we are in the midst of a mass extinction of our own making.
We must make our governments #ActNow:https://t.co/mqKGSOjHcUhttps://t.co/5NXPJKS8qi
Reposted with permission from our media associate Mongabay.
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By Ana Maldonado-Contreras
- Your gut is home to trillions of bacteria that are vital for keeping you healthy.
- Some of these microbes help to regulate the immune system.
- New research, which has not yet been peer-reviewed, shows the presence of certain bacteria in the gut may reveal which people are more vulnerable to a more severe case of COVID-19.
You may not know it, but you have an army of microbes living inside of you that are essential for fighting off threats, including the virus that causes COVID-19.
How Do Resident Bacteria Keep You Healthy?<p>Our immune defense is part of a complex biological response against harmful pathogens, such as viruses or bacteria. However, because our bodies are inhabited by trillions of mostly beneficial bacteria, virus and fungi, activation of our immune response is tightly regulated to distinguish between harmful and helpful microbes.</p><p>Our bacteria are spectacular companions diligently helping prime our immune system defenses to combat infections. A seminal study found that mice treated with antibiotics that eliminate bacteria in the gut exhibited an impaired immune response. These animals had low counts of virus-fighting white blood cells, weak antibody responses and poor production of a protein that is vital for <a href="https://doi.org/10.1073/pnas.1019378108" target="_blank">combating viral infection and modulating the immune response</a>.</p><p><a href="https://doi.org/10.1371/journal.pone.0184976" target="_blank" rel="noopener noreferrer">In another study</a>, mice were fed <em>Lactobacillus</em> bacteria, commonly used as probiotic in fermented food. These microbes reduced the severity of influenza infection. The <em>Lactobacillus</em>-treated mice did not lose weight and had only mild lung damage compared with untreated mice. Similarly, others have found that treatment of mice with <em>Lactobacillus</em> protects against different <a href="https://doi.org/10.1038/srep04638" target="_blank" rel="noopener noreferrer">subtypes of</a> <a href="https://doi.org/10.1038/s41598-017-17487-8" target="_blank" rel="noopener noreferrer">influenza</a> <a href="https://doi.org/10.1371/journal.ppat.1008072" target="_blank" rel="noopener noreferrer">virus</a> and human respiratory syncytial virus – the <a href="https://doi.org/10.1038/s41598-019-39602-7" target="_blank" rel="noopener noreferrer">major cause of viral bronchiolitis and pneumonia in children</a>.</p>
Chronic Disease and Microbes<p>Patients with chronic illnesses including Type 2 diabetes, obesity and cardiovascular disease exhibit a hyperactive immune system that fails to recognize a harmless stimulus and is linked to an altered gut microbiome.</p><p>In these chronic diseases, the gut microbiome lacks bacteria that activate <a href="https://doi.org/10.1126/science.1198469" target="_blank" rel="noopener noreferrer">immune cells</a> that block the response against harmless bacteria in our guts. Such alteration of the gut microbiome is also observed in <a href="https://doi.org/10.1073/pnas.1002601107" target="_blank" rel="noopener noreferrer">babies delivered by cesarean section</a>, individuals consuming a poor <a href="https://doi.org/10.1038/nature12820" target="_blank" rel="noopener noreferrer">diet</a> and the <a href="https://doi.org/10.1038/nature11053" target="_blank" rel="noopener noreferrer">elderly</a>.</p><p>In the U.S., 117 million individuals – about half the adult population – <a href="https://health.gov/our-work/food-nutrition/2015-2020-dietary-guidelines/guidelines/" target="_blank" rel="noopener noreferrer">suffer from Type 2 diabetes, obesity, cardiovascular disease or a combination of them</a>. That suggests that half of American adults carry a faulty microbiome army.</p><p>Research in my laboratory focuses on identifying gut bacteria that are critical for creating a balanced immune system, which fights life-threatening bacterial and viral infections, while tolerating the beneficial bacteria in and on us.</p><p>Given that diet affects the diversity of bacteria in the gut, <a href="https://www.umassmed.edu/nutrition/melody-trial-info/" target="_blank" rel="noopener noreferrer">my lab studies show how diet can be used</a> as a therapy for chronic diseases. Using different foods, people can shift their gut microbiome to one that boosts a healthy immune response.</p><p>A fraction of patients infected with SARS-CoV-2, the virus that causes COVID-19 disease, develop severe complications that require hospitalization in intensive care units. What do many of those patients have in common? <a href="https://www.cdc.gov/mmwr/volumes/69/wr/mm6912e2.htm" target="_blank" rel="noopener noreferrer">Old age</a> and chronic diet-related diseases like obesity, Type 2 diabetes and cardiovascular disease.</p><p><a href="http://doi.org/10.1016/j.jada.2008.12.019" target="_blank" rel="noopener noreferrer">Black and Latinx people are disproportionately affected by obesity, Type 2 diabetes and cardiovascular disease</a>, all of which are linked to poor nutrition. Thus, it is not a coincidence that <a href="https://www.cdc.gov/mmwr/volumes/69/wr/mm6933e1.htm" target="_blank" rel="noopener noreferrer">these groups have suffered more deaths from COVID-19</a> compared with whites. This is the case not only in the U.S. but also <a href="https://www.washingtonpost.com/world/europe/blacks-in-britain-are-four-times-as-likely-to-die-of-coronavirus-as-whites-data-show/2020/05/07/2dc76710-9067-11ea-9322-a29e75effc93_story.html" target="_blank" rel="noopener noreferrer">in Britain</a>.</p>
Discovering Microbes That Predict COVID-19 Severity<p>The COVID-19 pandemic has inspired me to shift my research and explore the role of the gut microbiome in the overly aggressive immune response against SARS-CoV-2 infection.</p><p>My colleagues and I have hypothesized that critically ill SARS-CoV-2 patients with conditions like obesity, Type 2 diabetes and cardiovascular disease exhibit an altered gut microbiome that aggravates <a href="https://theconversation.com/exercise-may-help-reduce-risk-of-deadly-covid-19-complication-ards-136922" target="_blank" rel="noopener noreferrer">acute respiratory distress syndrome</a>.</p><p>Acute respiratory distress syndrome, a life-threatening lung injury, in SARS-CoV-2 patients is thought to develop from a <a href="http://doi.org/10.1016/j.cytogfr.2020.05.003" target="_blank" rel="noopener noreferrer">fatal overreaction of the immune response</a> called a <a href="https://theconversation.com/blocking-the-deadly-cytokine-storm-is-a-vital-weapon-for-treating-covid-19-137690" target="_blank" rel="noopener noreferrer">cytokine storm</a> <a href="http://doi.org/10.1016/S2213-2600(20)30216-2" target="_blank" rel="noopener noreferrer">that causes an uncontrolled flood</a> <a href="http://doi.org/10.1016/S2213-2600(20)30216-2" target="_blank" rel="noopener noreferrer">of immune cells into the lungs</a>. In these patients, their own uncontrolled inflammatory immune response, rather than the virus itself, causes the <a href="http://doi.org/10.1007/s00134-020-05991-x" target="_blank" rel="noopener noreferrer">severe lung injury and multiorgan failures</a> that lead to death.</p><p>Several studies <a href="https://doi.org/10.1016/j.trsl.2020.08.004" target="_blank" rel="noopener noreferrer">described in one recent review</a> have identified an altered gut microbiome in patients with COVID-19. However, identification of specific bacteria within the microbiome that could predict COVID-19 severity is lacking.</p><p>To address this question, my colleagues and I recruited COVID-19 hospitalized patients with severe and moderate symptoms. We collected stool and saliva samples to determine whether bacteria within the gut and oral microbiome could predict COVID-19 severity. The identification of microbiome markers that can predict the clinical outcomes of COVID-19 disease is key to help prioritize patients needing urgent treatment.</p><p><a href="https://doi.org/10.1101/2021.01.05.20249061" target="_blank" rel="noopener noreferrer">We demonstrated</a>, in a paper which has not yet been peer reviewed, that the composition of the gut microbiome is the strongest predictor of COVID-19 severity compared to patient's clinical characteristics commonly used to do so. Specifically, we identified that the presence of a bacterium in the stool – called <em>Enterococcus faecalis</em>– was a robust predictor of COVID-19 severity. Not surprisingly, <em>Enterococcus faecalis</em> has been associated with <a href="https://doi.org/10.1053/j.gastro.2011.05.035" target="_blank" rel="noopener noreferrer">chronic</a> <a href="https://doi.org/10.1016/S0002-9440(10)61172-8" target="_blank" rel="noopener noreferrer">inflammation</a>.</p><p><em>Enterococcus faecalis</em> collected from feces can be grown outside of the body in clinical laboratories. Thus, an <em>E. faecalis</em> test might be a cost-effective, rapid and relatively easy way to identify patients who are likely to require more supportive care and therapeutic interventions to improve their chances of survival.</p><p>But it is not yet clear from our research what is the contribution of the altered microbiome in the immune response to SARS-CoV-2 infection. A recent study has shown that <a href="https://doi.org/10.1101/2020.12.11.416180" target="_blank" rel="noopener noreferrer">SARS-CoV-2 infection triggers an imbalance in immune cells</a> called <a href="https://doi.org/10.1111/imr.12170" target="_blank" rel="noopener noreferrer">T regulatory cells that are critical to immune balance</a>.</p><p>Bacteria from the gut microbiome are responsible for the <a href="https://doi.org/10.7554/eLife.30916.001" target="_blank" rel="noopener noreferrer">proper activation</a> <a href="https://doi.org/10.1126/science.1198469" target="_blank" rel="noopener noreferrer">of those T-regulatory</a> <a href="https://doi.org/10.1038/nri.2016.36" target="_blank" rel="noopener noreferrer">cells</a>. Thus, researchers like me need to take repeated patient stool, saliva and blood samples over a longer time frame to learn how the altered microbiome observed in COVID-19 patients can modulate COVID-19 disease severity, perhaps by altering the development of the T-regulatory cells.</p><p>As a Latina scientist investigating interactions between diet, microbiome and immunity, I must stress the importance of better policies to improve access to healthy foods, which lead to a healthier microbiome. It is also important to design culturally sensitive dietary interventions for Black and Latinx communities. While a good-quality diet might not prevent SARS-CoV-2 infection, it can treat the underlying conditions related to its severity.</p><p><em><a href="https://theconversation.com/profiles/ana-maldonado-contreras-1152969" target="_blank">Ana Maldonado-Contreras</a> is an assistant professor of Microbiology and Physiological Systems at the University of Massachusetts Medical School.</em></p><p><em>Disclosure statement: Ana Maldonado-Contreras receives funding from The Helmsley Charitable Trust and her work has been supported by the American Gastroenterological Association. She received The Charles A. King Trust Postdoctoral Research Fellowship. She is also member of the Diversity Committee of the American Gastroenterological Association.</em></p><p><em style="">Reposted with permission from <a href="https://theconversation.com/a-healthy-microbiome-builds-a-strong-immune-system-that-could-help-defeat-covid-19-145668" target="_blank" rel="noopener noreferrer" style="">The Conversation</a>. </em></p>
By Jeff Masters, Ph.D.
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